punkst

punkst provides a set of tools for analyzing high resolution spatial transcriptomics data.

Check the Installation page to install punkst.

Check the Input page for help on preparing your data from vairous platforms.

Check Quickstart to run a basic pixel level factor analysis pipeline on the example data, and Basics for details on the workflow.

See Modules for available operations and downstream analyses.

See Deployment for packaging your data and results for visualization on CartoScope.